| BIOLOGY 438 Spring 2008 MWF 10-11 AM Lecture G104 R 11:00-2:00 PM Laboratory SH215 R 2:00-5:00 PM Laboratory SH215 Hotlines: 465-4444 or 800-578-1449 |
Plant PhysiologyTentative Schedule | Dr. Ross Koning MWF 9-10 AM M224 MWF 11-12 Noon M224 Cell: 933-2712 rkoning@snet.net |
| Date | Lecture Topic | Laboratory | Resources |
| Wed-Jan 23 | Introduction: Science |
Quiz 1 Greenhouse Tour Statistics | A Sample Abstract |
| Fri-Jan 25 |
Why Study Plants? | ||
| Mon-Jan 28 | Basic Statistics |
Quiz 2 Morphology Plant Anatomy Tissue Culture |
Leaf Cross Section Stem Cross Section Root Cross Section |
| Wed-Jan 30 | Basic Botany | ||
| Fri-Feb 1 | Basic Botany (continued)
Due: Statistics Worksheet | ||
| Mon-Feb 4 | More Basic Botany |
Quiz 3 Cytology | Sample Abstract |
| Wed-Feb 6 | Finish Basic Botany | ||
| Fri-Feb 8 |
Basic Plant Cytology 1
Due: Plant Anatomy Amp. Abs. | ||
| Mon-Feb 11 | Basic Plant Cytology 1 to cytosol |
Quiz 4 Enzyme Kinetics in G220 | |
| Wed-Feb 13 |
Basic Plant Cytology 2through vacuole | ||
| Fri-Feb 15 | President's Vacation | ||
| Mon-Feb 18 | President's Vacation |
Quiz 5 Mineral Nutrition Diffusion |
Periodic Chart Betacyanin Structure |
| Wed-Feb 20 |
Basic Plant Cytology 2 through photorespiration Due: Plant Cytology Amp. Abs. | ||
| Fri-Feb 22 |
Snow Day Read these instead of lecture for next quiz: Cytoskeleton Cell Cycle | ||
| Mon-Feb 25 |
Ask questions on readings from Snow Day Enzyme Basics |
Quiz 6 (Finish Any Remaining Lecture Material) Excel Workshop on Regression Analysis |
Nonlinear Regression Calc and Plot Nonlinear Regression Pointers |
| Wed-Feb 27 | Enzyme Kinetics | ||
| Fri-Feb 29 |
Mineral Requirements Due: Diffusion Amp. Abs. | ||
| Mon-Mar 3 |
Finish Minerals Water and Water Movement |
Quiz 7 Osmosis | Osmosis Calc Plot |
| Wed-Mar 5 |
Finish Water Movement Osmosis | ||
| Fri Mar 7 | Root intake Due: Plant Morphology | ||
| Mon Mar 10 | Transpiration |
Quiz 8 Replenish Mineral Elements Transpiration | |
| Wed-Mar 12 | Solutes | ||
| Fri-Mar 14 |
Finish Solutes Due: Osmosis | ||
| Mon-Mar 17 | Spring Break | ||
| Wed-Mar 19 | |||
| Thu-Mar 21 | |||
| Mon-Mar 24 | Translocation |
Quiz 9 Planting Seeds, etc. Finish Mineral Nutrition Model System: Happy Bird | |
| Wed-Mar 26 | Light and Chlorophyll | ||
| Fri-Mar 28 |
Light Reactions Due: Transpiration Abstract and Formal Figure(s) with legends Biology Comp Exam 2-5 G100 | ||
| Mon-Mar 31 | Intro: Calvin Cycle |
Quiz 10 General Introduction Photon Flux Density CO2 Electrode Alternative Treat: Pea Stem Growth |
PSN Calculations More Cuvette Data |
| Wed-Apr 2 | Finish: Calvin Cycle | ||
| Fri-Apr 4 |
Photorespiration Due: Happy Bird Handout Only | ||
| Date | Lecture Topic | Laboratory | Resources |
| Mon-Apr 7 | C4 and CAM Cycles |
Quiz 11 Finish Pea Stem Growth Treat Root Initiation Measure Light and Pea Stem Growth Plant Wheat Berries | Pea Stem Growth Plot |
| Wed-Apr 9 | Plant Respiration-Glycolysis | ||
| Fri-Apr 11 |
Treat Bean Branching Treat: Leaf Abscission in SH215 and GH Due: Mineral Nutrition Abstract + Table (Compare Complete With Your Trial Deficiency) | ||
| Mon-Apr 14 |
Plant Respiration-Gluconeogenesis + Krebs |
Quiz 12 Finish (Dry Weights) Light and Pea Growth Start: Leaf Senescence |
|
| Wed-Apr 16 |
Finish Respiration-ETS and Ox Phos Plant Respiration-Pentose Phosphate Shunt | ||
| Fri-Apr 18 | Phytochrome Due: Photosynthesis Abstract + Fig with Legend + Amp page | ||
| Mon-Apr 21 |
Set up Seed Germination in SH215 Due: Genetic and Hormonal Pea Growth Abstract + Amp Mat + Print of Lab Aid Page |
Measure Seed Germination Quiz 13 Finish Root Initiation Finish Bean Branch Share data for Leaf Senescence |
Root Initiation Fit Root Internode Fit Bean Branch: Auxin Plot Bean Branch: Cytokinin Plot |
| Wed-Apr 23 | Photoperiodism | ||
| Fri-Apr 25 | Blue-Light Responses Due: Light and Growth Abstract + Amp + Figs | ||
| Mon-Apr 28 | Course Evaluation Finish: Blue-Light Responses Due: Wheat Leaf Senescence Abstract + LabAidPage |
Quiz 14 Finish 2008 Seed Germination Counts Finish Leaf Abscission Transformation Subculture MSOTG Petiole Abscission |
Senescence Plots Seed Germination Z-test Sheet Abscission Plots |
| Wed-Apr 30 | Auxins | ||
| Fri-May 2 | More About Auxin Gibberellins Due: Mung Bean Rooting Abstract + 2 LabAidPages | ||
| Mon-May 5 |
Cytokinins Due: Bean Branch Abstract + Pictogram (or LabAid Print) |
Due by 5 PM Monday May 12: Enzyme lab report | |
| Wed-May 7 |
Ethylene Abscisic Acid Seed Germination Worksheet Only Leaf Abscission Abstract + LabAid Print | ||
OBJECTIVES:
This course satisfies one of the 400-level course requirements for the biology major.
It is designed to provide you with comprehensive exposure to the subject of plant
physiology. You will learn about the structure and function of plants throughout
their development from seeds through reproduction. Considerable experience in
chemistry is assumed, as is recall from BIO 221 (Cell and Molecular Biology).
Our discussions and exercises will cover from the biochemical level through
the organismal level. The laboratory exercises will complement the lectures.
If you are a person who has over-specialized in molecular biology, zoology or
human biology, this course will expand your horizons significantly. As a study
of producers, this course will examine those organisms so important because of
their position at the energy and elemental intake portion of the energy pyramid
and the food web! Upon these organisms depends human survival.
ELECTRONIC MATERIALS:
You will find lecture notes, lab exercises, due dates,
and other course materials available for you on the World Wide Web at this address: http://plantphys.info/ There may be a required
username:___________________ and password:___________________ to access some of
these materials as they are copyrighted and therefore cannot be given out over
the internet beyond the members of our class.
TEXT:
Several texts in Plant Physiology are published...I have chosen none of them
because they are too deep (expecting too much background undergrads do not have
yet) or are extremely expensive (over $100) or both. This semester we are very fortunate
that a book that was focused just right and inexpensive but was long out of
print is now in a late draft form. The publisher has not agreed to publish it yet,
and the very kind primary author is willing to let us test the book draft this
semester. So you will be getting your textbook for free! If you want a finished
published text here are your choices:
L. Taiz and E. Zeiger. 2007. Plant Physiology. 4th ed. Sinauer Associates, Inc. This deep edition is priced at $112 so I have not adopted it.
W. G. Hopkins and N. P. A. Huner. 2004. Introduction to Plant Physiology. 3rd ed. John Wiley & Sons, Inc. While more introductory, it is also $119.
B. B. Buchanan, W. Gruissem, and R. L. Jones. 2000. Biochemistry and Molecular Biology of Plants. John Wiley & Sons, Inc. This book is VERY deep in biochemistry and extremely expensive at $155 for a new paperback.
LAB MANUAL:
Separate exercise worksheets will be handed out for your use. You should obtain a
three-ring binder to hold them together as a laboratory manual. The exercises will
overlap in time and due-dates, so having them all together and with you in class
each day is critical! The binder will help with that. I know spiral books are all
the rage, but a 3-ring binder is vastly superior for this course! Put your
name inside your binder so when it is lost you have at least some hope of recovery!
LAB KIT:
Large three-ring binder with zipper pouch containing: Small Scissors, Metric Rule,
Fine Forceps, Pencil (mechanical preferred), Eraser, Simple Calculator (+−×÷=).
Some would like to have some color pencils in their zipper pouch. A small pocket
knife or whatever you like to clean under your fingernails would be good to have
too. All of these are available inexpensively at retail stores just about anywhere.
Lab worksheets even partially completed in ink will receive a 10% penalty...use
pencil only...keep it in your zipper pouch so it is ready!
GRADING:
Your final course grade will be based on weekly quizzes, laboratory worksheets and
amplified abstracts, and a lab report as described below.
QUIZZES:
There will be a quiz given each week for the first few minutes of laboratory time.
Emphasis for each quiz will be whatever has been covered since the previous quiz
in either lecture or laboratory, but questions could be on anything previously in
the course and/or synthesis of separate ideas presented in the course.
Each quiz may consist of a variety of question types; be prepared for all!
You will be given one week after each quiz is returned in which to challenge,
in writing, the grading/scoring of that quiz. THERE WILL BE NO MAKE-UP QUIZZES!
Being tardy for the quiz will shorten your time to work on the quiz...when
all students who are on-time to class are finished, all quizzes will be collected
promptly. You be prompt too! Quizzes are collectively worth 40% of the course grade.
I have learned this semester that more than a few students will not attend lectures
unless there is a grading pressure to be there and to listen. In future semesters
the students WILL face a final exam as part of what students have taught me this
year.
LAB EXERCISES:
Each laboratory exercise will be inspired by a handout. You will work with one or more
partner(s). Each person will fill out and hand in their own handout and/or write a
one-page abstract about the project amplified
by attached notes, drawings, graphs, calculations, etc., depending on the exercise.
Electronic files are not acceptable documentation of your laboratory exercises.
The worksheet and/or amplified abstract will be due one week after the exercise
is officially completed and the due date will be posted on the official syllabus
page for this course on the website. The papers are due at the beginning of the
class period on the indicated date. Papers received after the starting time of the lecutre
by even 1 minute will be considered one-day late. Late papers will receive a penalty of
10% per day late but after the first graded exercise paper is returned to one
of your classmates, your late submission is no longer acceptable and earns a grade of 0%!
I grade as promptly as possible, so you need to be prompt too! The laboratory exercises
are collectively worth 50% of the course grade.
LABORATORY REPORT:
The format of the lab report must follow the standard guidelines in the departmental
style manual (Pechenik). The laboratory report must be handed in as a hard-copy;
electronic files are not acceptable. The laboratory report is due no later
than 5 PM on Monday, May 12, 2008; failure to hand in this report by this deadline
will result in a course grade of F, regardless of
the other grades earned in the course. The laboratory report is worth 10% of the
course grade. With some trepidation, at your request, I have provided a link to
a scoring rubric I have used in past semesters.
I think providing this undercuts your experience but perhaps you have already
done that to yourself by letting this assignment go to the end of the semester
without any attention on your part? If it helps you write a better report, even
as a crutch, well maybe at least you had to so some thinking on your own and
having a complete report is perhaps a better experience that the usual freshman
level paper. I have learned never again to allow a term paper to go to the end of the
semester...I leave this comment here to remind me of this advice for the next
issue of this course.
PARTICIPATION:
Participation in this laboratory course is essential but, due to its subjective
nature, is not given grading credit in a specific numerical sense. However,
should your course grade come near a grading border, my sense of your participation
in this course will be used as leverage into or barrier from the next-higher
grade. Being on-time to all classes, having all materials needed for class, turning in
assignments on time or early, being thorough in your laboratory work, being
attentive in both lab and lecture classes, working efficiently and cooperatively
with lab partners, asking pertinent questions, having answers to my questions in
lectures, etc. are all good ways to impress me about your committment to learning about
plant physiology. If you are a person who procrastinates, who does only the minimum,
who is tardy with everything, who complains about academic workloads, who watches
lab partners doing the work, who sleeps in class, or who can not or will not do
simple math, well...you will get what you earn...and only what you earn.
ACCOMMODATIONS:
If you are a student with a disability and believe you will need
accommodations for this class, it is your responsibility to contact
the Office of AccessAbility Services at (860) 465-5573. To avoid any
delay in the receipt of accommodations, you should contact the
Office of AccessAbility Services as soon as possible. Please understand
that I cannot provide accommodations based upon disability until I have
received an accommodation letter from the Office of AccessAbility Services.
Your cooperation is appreciated.
CHEATING:
In many exercises you will work with laboratory partners and will share
the data obtained. Your calculations, your reports, abstracts, and quizzes
must, however, be done ON YOUR OWN. Plagiarism will not be tolerated and
severe penalties will be invoked. Copying will not be tolerated. Extra credit
work will not be given to any one for any reason!
This page © Ross E. Koning 1994.
Go to the Course Schedule Page.
Go to the Plant Physiology Information Homepage.
Send comments and bug reports to Ross Koning at rkoning@snet.net.